anelson

About Amber Nelson

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So far Amber Nelson has created 72 blog entries.

CCKP launches new features to help bench and computational researchers discover and explore cancer data

By |2025-05-19T15:00:41+00:00May 12, 2025|CCKP, Resources|

The Cancer Complexity Knowledge Portal (CCKP) aims to be the one-stop shop for discovering cancer-related research datasets hosted on various data and tool repositories, [...]

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Investigator and Tool Highlight: CODAvision with Valentina Matos-Romero, Johns Hopkins University

By |2025-05-12T19:45:19+00:00May 6, 2025|Investigator Highlight, Tools|

What is your name, title and institutional affiliation? Valentina Matos-Romero, Ph.D. Candidate in Chemical and Biomolecular Engineering at Johns Hopkins University.​ What is [...]

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🚀 Tool Spotlight: Python Optimal Transport (POT) Library

By |2025-03-05T17:56:14+00:00March 5, 2025|CCKP, Resources|

The POT library brings the power of optimal transport (OT) to Python, helping researchers compare and transform probability distributions efficiently. OT is a mathematical [...]

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Featured Publication: METI: deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics

By |2024-10-02T21:23:30+00:00October 2, 2024|CCKP, Community News, Resources|

METI: deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics Recent advances in spatial transcriptomics (ST) have improved insights into the tumor [...]

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Featured Dataset: Structural Basis for Self-Discrimination by Neoantigen-Specific TCRs

By |2024-10-02T21:22:27+00:00October 2, 2024|CCKP, Data Features|

Structural Basis for Self-Discrimination by Neoantigen-Specific TCRs This study highlights the RNA sequencing and whole exome sequencing data associated with the investigation of a [...]

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NEW! Patient Advocacy Resources Available on the Cancer Complexity Knowledge Portal

By |2024-10-02T21:00:33+00:00October 2, 2024|CCKP, Community News, Data Features|

Patient advocates bring essential perspectives to cancer research and are involved in several consortia associated with the MC2 Center. To support their efforts, as [...]

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Featured Dataset: Spatial transcriptomics of xenograft tumor tissues

By |2024-07-11T14:35:46+00:00July 10, 2024|CCKP, Data Features|

This study aims to compare the epigenomes of different patient-derived models of colorectal cancer (PDO (Patient-Derived Organoid), PDX (Patient-Derived Xenograft), and PDOX (Patient-Derived Orthotopic [...]

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Featured Dataset: Transcriptional dysregulation of BAHCC1 in melanoma [Cut & Tag]

By |2024-06-10T19:01:55+00:00June 19, 2024|CCKP|

Cut&Tag sequencing data from melanoma cells revealed that BAHCC1, a gene associated with Super-Enhancers (SE) and critical for cancer growth, is highly active compared [...]

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