Data Features

Highlights of new data, tools and resources on the Cancer Complexity Knowledge Portal

๐Ÿ“ˆ New Dataset: Xenoline-polarized macrophages as an alternative in vitro model of tumor-associated macrophages in glioblastoma

By |2026-05-15T21:02:44+00:00May 28, 2026|CCKP, Data Features|

Immune cells called macrophages make up a large chunk of a glioblastoma tumor โ€” and they help it grow, hide from treatment, and resist [...]

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๐Ÿ“ˆ New Dataset: Single cell profiling of bone metastasis ecosystems from multiple cancer types reveals convergent and divergent mechanisms of bone colonization

By |2026-04-15T19:02:07+00:00April 29, 2026|CCKP, Community News, Data Features|

Bone metastasis is common across cancer types, but what's happening at the cellular level inside those lesions has been hard to map. This dataset uses [...]

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๐Ÿ“ˆNew Dataset: Single-cell RNA sequencing reveals different cellular states in malignant cells and the tumor microenvironment in primary and metastatic ER-positive breast cancer

By |2026-03-11T17:02:50+00:00March 31, 2026|CCKP, Data Features, Resources|

A new single-cell RNA-sequencing dataset provides in-depth profiling of estrogen receptor (ER)-positive primary and metastatic breast cancer tumors from 23 patients, offering insight into [...]

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๐Ÿ“ˆNew Dataset: Impact of post-lysis stopping point prior to reverse transcription

By |2026-03-11T17:00:52+00:00March 11, 2026|CCKP, Data Features, Resources|

Weโ€™re excited to share the dataset โ€œImpact of Post-Lysis Stopping Point Prior to Reverse Transcription,โ€ generated using the newly developed particle-templated instant partition sequencing [...]

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๐ŸงฐCCKP Toolkit Tool Feature: AMICI

By |2026-02-13T17:35:12+00:00February 25, 2026|Data Features|

AMICIย (Advanced Multilanguage Interface for CVODES and IDAS) is a high-performance Python and C++ interface for solving large-scale ordinary and algebraic differential equation models. It provides [...]

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๐Ÿ“ˆNew Dataset: NR2F1 underlies persistence of residual disease in BRAF-mutant melanoma

By |2026-01-15T21:39:21+00:00January 15, 2026|CCKP, Data Features|

Targeted therapies for melanoma, like BRAF and MEK inhibitors, can shrink tumors but often fail to completely eliminate all cancer cells. A small group [...]

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๐Ÿ“ˆNew Dataset: Pancreatic cancer xenograft tumor RNA sequencing and pathologic differentiation of matched human tumors

By |2025-12-08T17:46:48+00:00September 25, 2025|CCKP, Data Features|

From Brown et al. (https://pubmed.ncbi.nlm.nih.gov/38471099/), this dataset investigates the epithelial to mesenchymal transition (EMT) in pancreatic cancer. EMT is believed to correlate with metastatic [...]

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New Dataset: Window of opportunity trial reveals mechanisms of response and resistance to navtemadlin in patients with recurrent glioblastoma

By |2025-07-09T16:41:54+00:00July 23, 2025|CCKP, Data Features|

This dataset investigates the effectiveness of p53 reactivation in treating glioblastoma. They achieve this by treating multiple patients with differing levels of MDM2 inhibitor [...]

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Featured Dataset: Structural Basis for Self-Discrimination by Neoantigen-Specific TCRs

By |2024-10-02T21:22:27+00:00October 2, 2024|CCKP, Data Features|

Structural Basis for Self-Discrimination by Neoantigen-Specific TCRs This study highlights the RNA sequencing and whole exome sequencing data associated with the investigation of a [...]

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NEW! Patient Advocacy Resources Available on the Cancer Complexity Knowledge Portal

By |2024-10-02T21:00:33+00:00October 2, 2024|CCKP, Community News, Data Features|

Patient advocates bring essential perspectives to cancer research and are involved in several consortia associated with the MC2 Center. To support their efforts, as [...]

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