🧰 CCKP Toolkit Tool Feature: Tellurium
Tellurium is a Python environment for modeling and simulating biological systems. It provides a comprehensive toolkit for systems and synthetic biology, enabling researchers to [...]
Save the Date: 2026 All Consortia Meeting, October 20 – 22, 2026
We are excited to announce the 2026 MC2 Center All Consortia Meeting! In October 2026 we will bring together the CCBIR, CSBC, MetNet, PS-ON and [...]
📈New Dataset: Pancreatic cancer xenograft tumor RNA sequencing and pathologic differentiation of matched human tumors
From Brown et al. (https://pubmed.ncbi.nlm.nih.gov/38471099/), this dataset investigates the epithelial to mesenchymal transition (EMT) in pancreatic cancer. EMT is believed to correlate with metastatic [...]
🚀 Tool Spotlight: InterpolAI
InterpolAI is a deep learning-based tool that allows for advanced image analysis on biomedical images to help with 3D tissue mapping. Specifically, this tool [...]
New Dataset: Window of opportunity trial reveals mechanisms of response and resistance to navtemadlin in patients with recurrent glioblastoma
This dataset investigates the effectiveness of p53 reactivation in treating glioblastoma. They achieve this by treating multiple patients with differing levels of MDM2 inhibitor [...]
Tool Spotlight: Spotiphy
Spotiphy is a Python-based pipeline designed to enhance our understanding of biological tissues by integrating sequencing-based spatial transcriptomics data, scRNA-seq data, and high-resolution histological [...]
Webinar: Exploring Personal Genomics with OpenCRAVAT
For those interested in variant interpretation, join the webinar "Exploring Personal Genomics with OpenCRAVAT" featuring Dr. Jasmine Baker and Dr. Rachel Karchin. OpenCRAVAT is [...]
CCKP launches new features to help bench and computational researchers discover and explore cancer data
The Cancer Complexity Knowledge Portal (CCKP) aims to be the one-stop shop for discovering cancer-related research datasets hosted on various data and tool repositories, [...]
Investigator and Tool Highlight: CODAvision with Valentina Matos-Romero, Johns Hopkins University
What is your name, title and institutional affiliation? Valentina Matos-Romero, Ph.D. Candidate in Chemical and Biomolecular Engineering at Johns Hopkins University. What is [...]
🚀 Tool Spotlight: Python Optimal Transport (POT) Library
The POT library brings the power of optimal transport (OT) to Python, helping researchers compare and transform probability distributions efficiently. OT is a mathematical [...]