Tool Spotlight: Spotiphy
Spotiphy is a Python-based pipeline designed to enhance our understanding of biological tissues by integrating sequencing-based spatial transcriptomics data, scRNA-seq data, and high-resolution histological [...]
Webinar: Exploring Personal Genomics with OpenCRAVAT
For those interested in variant interpretation, join the webinar "Exploring Personal Genomics with OpenCRAVAT" featuring Dr. Jasmine Baker and Dr. Rachel Karchin. OpenCRAVAT is [...]
CCKP launches new features to help bench and computational researchers discover and explore cancer data
The Cancer Complexity Knowledge Portal (CCKP) aims to be the one-stop shop for discovering cancer-related research datasets hosted on various data and tool repositories, [...]
Investigator and Tool Highlight: CODAvision with Valentina Matos-Romero, Johns Hopkins University
What is your name, title and institutional affiliation? Valentina Matos-Romero, Ph.D. Candidate in Chemical and Biomolecular Engineering at Johns Hopkins University. What is [...]
🚀 Tool Spotlight: Python Optimal Transport (POT) Library
The POT library brings the power of optimal transport (OT) to Python, helping researchers compare and transform probability distributions efficiently. OT is a mathematical [...]
Featured Publication: METI: deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics
METI: deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics Recent advances in spatial transcriptomics (ST) have improved insights into the tumor [...]
Featured Dataset: Structural Basis for Self-Discrimination by Neoantigen-Specific TCRs
Structural Basis for Self-Discrimination by Neoantigen-Specific TCRs This study highlights the RNA sequencing and whole exome sequencing data associated with the investigation of a [...]
NEW! Patient Advocacy Resources Available on the Cancer Complexity Knowledge Portal
Patient advocates bring essential perspectives to cancer research and are involved in several consortia associated with the MC2 Center. To support their efforts, as [...]
New Team Science Seminar on October 16th!
Creating Diverse, Equitable, and Inclusive Teams Dr. LaKaija Johnson, Principal Scientist, Team Science October 16, 2024, 11:00 AM - Noon PT / 2:00 - [...]
Featured Dataset: Spatial transcriptomics of xenograft tumor tissues
This study aims to compare the epigenomes of different patient-derived models of colorectal cancer (PDO (Patient-Derived Organoid), PDX (Patient-Derived Xenograft), and PDOX (Patient-Derived Orthotopic [...]